very broken :(

packages/config/package.json

@@ -35,14 +35,15 @@
   },
   "homepage": "https://www.jspsych.org/latest/developers/configuration",
   "dependencies": {
-    "@rollup/plugin-commonjs": "25.0.7",
+    "@rollup/plugin-commonjs": "26.0.1",
+    "@rollup/plugin-json": "^6.1.0",
     "@rollup/plugin-node-resolve": "15.2.3",
     "@sucrase/jest-plugin": "3.0.0",
     "@types/gulp": "4.0.17",
     "@types/jest": "29.5.8",
     "alias-hq": "6.2.3",
     "canvas": "^2.11.2",
-    "esbuild": "0.15.14",
+    "esbuild": "0.23.1",
     "gulp": "5.0.0",
     "gulp-cli": "3.0.0",
     "gulp-file": "0.4.0",
@@ -52,10 +53,10 @@
     "jest": "29.7.0",
     "jest-environment-jsdom": "29.7.0",
     "merge-stream": "2.0.0",
-    "rollup": "4.3.0",
-    "rollup-plugin-dts": "5.0.0",
-    "rollup-plugin-esbuild": "5.0.0",
-    "rollup-plugin-node-externals": "5.0.2",
+    "rollup": "4.21.2",
+    "rollup-plugin-dts": "6.1.1",
+    "rollup-plugin-esbuild": "6.1.1",
+    "rollup-plugin-node-externals": "7.1.3",
     "sucrase": "3.34.0",
     "tslib": "2.6.2",
     "typescript": "^5.2.2"
@@ -66,7 +67,4 @@
       "inquirer": "10.1.6"
     }
   }
-
-
-
 }

packages/config/rollup-plugin-build-citation.js

@@ -1,44 +1,55 @@
-const fs = require("node:fs");
-const path = require("path");
-require("@citation-js/plugin-software-formats");
-const { Cite } = require("@citation-js/core");
+import "@citation-js/plugin-software-formats";
+
+import fs from "node:fs";
+import { extname } from "path";
+
+import { Cite } from "@citation-js/core";
+import { createFilter } from "@rollup/pluginutils";
+import MagicString from "magic-string";
+
+export default function cffToJsonPlugin() {
+  const options = { include: ["**/index*"], exclude: [], sourcemap: false };
+  let filter = createFilter(options.include, options.exclude);
+
+  const citationCff = fs.readFileSync("./CITATION.cff", "utf-8").toString();
+  const citationJson = () => {
+    try {
+      return JSON.stringify(
+        Cite(citationCff).format("data", {
+          format: "object",
+          lang: "en-us",
+        }),
+        null,
+        2
+      );
+    } catch (error) {
+      this.error(`Error building citation from CITATION.cff: ${error.message}`);
+    }
+  };
 
-function cffToJsonPlugin(options = {}) {
   return {
     name: "rollup-plugin-cff-to-json",
     version: "1.0.0",
-
-    generateBundle() {
-      const srcDir = options.srcDir || __dirname;
-      const indexFilePath = path.join(srcDir, "index.js"); // Assume index.js is in src
-
-      const updateCitations = (indexFilePath, citationJson) => {
-        let fileContent = fs.readFileSync(indexFilePath, "utf-8");
-        fileContent = fileContent.replace(/`{citationJson}`/g, citationJson);
-        fs.writeFileSync(indexFilePath, fileContent, "utf-8");
-      };
-
-      const templateDir = path.dirname(srcDir);
-      const cffFilePath = path.join(templateDir, "CITATION.cff"); // Assume CITATION.cff is top level
-
-      try {
-        let cffCitation = fs.readFileSync(cffFilePath, "utf-8").toString();
-        Cite.async(cffCitation).then((data) => {
-          const citationJson = JSON.stringify(
-            data.format("data", {
-              format: "object",
-              lang: "en-US",
-            }),
-            null,
-            2
-          );
-          updateCitations(indexFilePath, citationJson);
-        });
-      } catch (error) {
-        this.error(`Error building citation from CITATION.cff: ${error.message}`);
+    transform: function (code, id) {
+      //console.log(typeof id);
+      console.log(options.include);
+      console.log(id);
+      console.log(filter(id));
+      if (!filter(id) || (extname(id) !== ".js" && extname(id) !== ".ts")) return;
+      console.log("transforming: " + id);
+      const magicString = new MagicString(code);
+      const targetString = "citation: []";
+      const citationString = "citation: " + citationJson();
+      const startIndex = code.indexOf(targetString);
+      if (startIndex !== -1) {
+        magicString.overwrite(startIndex, startIndex + targetString.length, citationString);
+      } else {
+        this.error(`Error replacing citation string in ${id}`);
       }
+
+      return {
+        code: magicString.toString(),
+      };
     },
   };
 }
-
-module.exports = cffToJsonPlugin;

packages/config/rollup.js

@@ -9,7 +9,7 @@ import esbuild from "rollup-plugin-esbuild";
 import externals from "rollup-plugin-node-externals";
 import ts from "typescript";
 
-import cffToJsonPlugin from "./rollup-plugin-build-citation";
+import cffToJsonPlugin from "./rollup-plugin-build-citation.js";
 
 const getTsCompilerOptions = () => {
   const cwd = process.cwd();

packages/jspsych/src/JsPsych.ts

@@ -1,8 +1,3 @@
-import "@citation-js/plugin-software-formats";
-
-import fs from "fs";
-import path from "path";
-
 import { Cite } from "@citation-js/core";
 import autoBind from "auto-bind";
 // To work with citations
@@ -14,7 +9,6 @@ import { JsPsychData, JsPsychDataDependencies } from "./modules/data";
 import { JsPsychExtension } from "./modules/extensions";
 import { PluginAPI, createJointPluginAPIObject } from "./modules/plugin-api";
 import { JsPsychPlugin } from "./modules/plugins";
-import { PluginInfo } from "./modules/plugins";
 import * as randomization from "./modules/randomization";
 import * as turk from "./modules/turk";
 import * as utils from "./modules/utils";

packages/plugin-html-keyboard-response/CITATION.cff

@@ -0,0 +1,47 @@
+cff-version: "1.2.0"
+authors:
+- family-names: Leeuw
+  given-names: Joshua R.
+  name-particle: de
+  orcid: "https://orcid.org/0000-0003-4815-2364"
+- family-names: Gilbert
+  given-names: Rebecca A.
+  orcid: "https://orcid.org/0000-0003-4574-7792"
+- family-names: Luchterhandt
+  given-names: Björn
+  orcid: "https://orcid.org/0000-0002-9225-2787"
+contact:
+- family-names: Leeuw
+  given-names: Joshua R.
+  name-particle: de
+  orcid: "https://orcid.org/0000-0003-4815-2364"
+doi: 10.5281/zenodo.7702307
+message: If you use this software, please cite our article in the
+  Journal of Open Source Software.
+preferred-citation:
+  authors:
+  - family-names: Leeuw
+    given-names: Joshua R.
+    name-particle: de
+    orcid: "https://orcid.org/0000-0003-4815-2364"
+  - family-names: Gilbert
+    given-names: Rebecca A.
+    orcid: "https://orcid.org/0000-0003-4574-7792"
+  - family-names: Luchterhandt
+    given-names: Björn
+    orcid: "https://orcid.org/0000-0002-9225-2787"
+  date-published: 2023-05-11
+  doi: 10.21105/joss.05351
+  issn: 2475-9066
+  issue: 85
+  journal: Journal of Open Source Software
+  publisher:
+    name: Open Journals
+  start: 5351
+  title: "jsPsych: Enabling an Open-Source Collaborative Ecosystem of
+    Behavioral Experiments"
+  type: article
+  url: "https://joss.theoj.org/papers/10.21105/joss.05351"
+  volume: 8
+title: "jsPsych: Enabling an Open-Source Collaborative Ecosystem of
+  Behavioral Experiments"