fixes #141

docs/markdown_docs/plugins/jspsych-animation.md

@@ -18,7 +18,7 @@ prompt | string | "" | This string can contain HTML markup. Any content here wil
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-call-function.md

@@ -15,7 +15,7 @@ func | function | *undefined* | The function to call.
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-categorize-animation.md

@@ -23,7 +23,7 @@ timing_feedback_duration | numeric | 2000 | How long to show the feedback (milli
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-categorize.md

@@ -23,7 +23,7 @@ timing_feedback_duration | numeric | 2000 | How long to show the feedback for (m
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-free-sort.md

@@ -19,7 +19,7 @@ prompt_location | string | "above" | Indicates whether to show the prompt `"abov
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-html.md

@@ -25,7 +25,7 @@ check_fn | function | `function(){ return true; }` | This function is called wit
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-multi-stim-multi-response.md

@@ -18,7 +18,7 @@ response_ends_trial | boolean | true | If true, then the trial will end whenever
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-palmer.md

@@ -28,7 +28,7 @@ prompt | string | "" | This string can contain HTML markup. Any content here wil
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-reconstruction.md

@@ -18,7 +18,7 @@ key_decrease | key code | 'g' | The key to press for decreasing the parameter va
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-same-different.md

@@ -21,7 +21,7 @@ prompt | string | "" | This string can contain HTML markup. Any content here wil
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-similarity.md

@@ -33,7 +33,7 @@ prompt | string | "" | This string can contain HTML markup. Any content here wil
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-single-audio.md

@@ -20,7 +20,7 @@ response_ends_trial | boolean | true | If true, then the trial will end whenever
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-single-stim.md

@@ -20,7 +20,7 @@ response_ends_trial | boolean | true | If true, then the trial will end whenever
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-survey-likert.md

@@ -27,15 +27,11 @@ preamble | array | empty string | Array of HTML formatted strings to display at
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------
-<<<<<<< HEAD
 responses | JSON string | A string in JSON format containing the responses for each question. The encoded object will have a separate variable for the response to each question, with the first question in the trial being recorded in `Q0`, the second in `Q1`, and so on. The responses are recorded as integers, representing the position of the slider on the scale.
-=======
-Q0, Q1, ... , Q*n* | numeric | The response to each question will be recorded in its own variable, with the first question in the trial being recorded in `Q0`, the second in `Q1`, and so on. The responses are recorded as integers, representing the position of the slider on the scale.
->>>>>>> origin/dev
 rt | numeric | The response time in milliseconds for the subject to make a response. The time is measured from when the questions first appear on the screen until the subject's response.
 
 ## Examples

docs/markdown_docs/plugins/jspsych-survey-text.md

@@ -13,15 +13,11 @@ preamble | string | empty string | HTML formatted string to display at the top o
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------
-<<<<<<< HEAD
 responses | JSON string | A string in JSON format containing the responses for each question. The encoded object will have a separate variable for the response to each question, with the first question in the trial being recorded in `Q0`, the second in `Q1`, and so on. Each response is a string containing whatever the subject typed into the associated text box.
-=======
-Q0, Q1, ... , Q_n_ | string | Each question in the trial gets its own response in the data object. The first question will be `Q0`, the second `Q1`, and so on. Each response is a string containing whatever the subject typed into the associated text box.
->>>>>>> origin/dev
 rt | numeric | The response time in milliseconds for the subject to make a response.
 
 ## Examples

docs/markdown_docs/plugins/jspsych-text.md

@@ -14,7 +14,7 @@ cont_key | array or `'mouse'` | [ ] | This array contains the keys that the subj
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-visual-search-circle.md

@@ -29,7 +29,7 @@ timing_fixation | numeric | 1000 | How long to show the fixation image for befor
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-vsl-animate-occlusion.md

@@ -25,7 +25,7 @@ timing_pre_movement | numeric | 500 | How long to wait before the stimuli starts
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-vsl-grid-scene.md

@@ -17,7 +17,7 @@ timing_duration | numeric | 2000 | How long to show the stimulus for in millisec
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/jspsych-xab.md

@@ -19,7 +19,7 @@ timing_ab | numeric | -1 | How long to show A and B in milliseconds. If the valu
 
 ## Data Generated
 
-In addition to the [default data collected by all plugins](), this plugin collects the following data for each trial.
+In addition to the [default data collected by all plugins](overview#datacollectedbyplugins), this plugin collects the following data for each trial.
 
 Name | Type | Value
 -----|------|------

docs/markdown_docs/plugins/overview.md

@@ -31,6 +31,20 @@ var single_stim_block = {
 }
 ```
 
+## Data collected by plugins
+
+Each plugin defines what data is collected on the trial. The documentation for each plugin specifies what data is collected by that plugin.
+
+In addition to the data collected by a plugin, there is a default set of data that is collected on every trial. The collected data are:
+
+Name | Type | Value
+-----|------|------
+trial_type | string | The name of the plugin used to run the trial.
+trial_index | numeric | The index of the current trial in the **block**.
+trial_index_global | numeric | The index of the current trial across the whole experiment.
+time_elapsed | numeric | The number of milliseconds since the start of the experiment when the trial ended.
+internal_chunk_id | string | A string identifier for the current chunk.
+
 ## List of available plugins
 
 This table is a description of all plugins that are currently bundled with jsPsych. Click on the name of a plugin to view its documentation page.
@@ -45,6 +59,7 @@ This table is a description of all plugins that are currently bundled with jsPsy
  [jspsych‑html](plugins/jspsych-html) | Displays an external HTML page (such as a consent form) and lets the subject respond by clicking a button or pressing a key. Plugin can validate their response, which is useful for making sure that a subject has granted consent before starting the experiment.
  [jspsych‑multi‑stim‑multi‑response](plugins/jspsych-multi-stim-multi-response) | A more generalized version of the single-stim plugin. Can display multiple stimuli in a single trial, and collect multiple responses in a single trial.
  [jspsych‑palmer](plugins/jspsych-palmer) | Shows grid-like stimuli inspired by Stephen Palmer's work. The stimuli are editable: subjects can add and subtract parts interactively. Also contains a method for generating the HTML code to render the stimuli, allowing them to be used in other plugins.
+ [jspsych‑reconstruction](plugins/jspsych-reconstruction) | The subject interacts with a stimulus by modifying a parameter of the stimulus and observing the change in the stimulus in real-time.  
  [jspsych‑same‑different](plugins/jspsych-same-different) | A same-different judgment task. A stimulus is shown, followed by a brief gap, and then another stimulus is shown. The subject indicates whether the stimuli are the same or different.
  [jspsych‑similarity](plugins/jspsych-similarity) | Two stimuli are shown sequentially, and the subject indicates how similar they are by dragging a slider object.
  [jspsych‑single‑stim](plugins/jspsych-single-stim) | A basic plugin for displaying a stimulus and getting a keyboard response.